

Dunno what sort of setup you have, but what I would do, considering my setup and by being a tad on the neurotic side, is to unscrew and detatch any drives but the one to be flashed. This, I think, is the only way to be absolutely sure nothing goes in the wrong place.
Been some years since I last used Fedora, so not able to confirm nor deny anything. Sorry for not being able to help further. =/